That whole mess back there should have got several someone's reprimanded or fired. To be fair it was a REALLY quarter-arse setup that was quickly implemented to delete the air ride because the cost to install it on trucks that were (at the time) going to have the cabs upgraded to armor did not make sense. I spent like a year messing around with it. Mine never hit the spare crane but had MANY other issues - primarily the whole cab would shift like 1" to the left when the pin engaged the latch. I actually got a new bracket - which according to the TM had a revised part number. I was SO convinced they must have changed the dimensions....

Nope! Same $hit. I ended up doing multiple shim revisions of the whole mess. The latch had to be angled up in the front, and the latch bracket had to leveled left to right.
Every one was different is what I came to the realization of. The tolerance stack up between all the parts is obscene and so your only choice is to iteratively zero in on each truck's unique problems and address them.
Sorry I don't have a magic bullet on it. It's royally F'd and I wish it wasn't. FWIW mine has about 3/4" between the latch pin triangular plate and the crane. And that's pretty much immovable. You may have better luck moving the crane back a little.